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Table 5 Summary of features computed from the predicted secondary structure for the four employed prediction methods;√ denotes that a given feature was used, while – denotes a feature that was not selected

From: Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

Feature Set

 

secondary structure prediction methods

  

PSIPRED

JNET

TRANSSEC

PROTEUS2

SSP k

C

√

√

√

√

 

E

√

√

√

√

 

H

√

√

√

√

SCORE SSP

 

√

--

√

√

3PATTERN m, k, SSP

CCC

√

√

√

√

 

CCx

--

--

--

√

 

xCC

--

--

--

√

 

EEE

√

√

√

√

 

HHH

√

√

√

√

CONTENT k, SSP

C

√

√

√

√

 

E

√

√

√

√

 

H

√

√

√

√

Total

 

10

9

10

12