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Table 6 Running times.

From: CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data

Variable selection methods

Method

Running time per learningset

Multiclass F-Test

3.1 s

Krusal-Wallis test

3.5 s

Limma*

0.16s

Random Forest†,*

4.1 s

Classification methods

Method

# variables

Running time per 50 learningsets

DLDA

all (2308)

2.7 s

LDA

10

1.4 s

QDA

2

1.0 s

Partial Least Squares

all (2308)

4.2 s

Shrunken Centroids

all (2308)

2.8 s

SVM*

all (2308)

88s

  1. Running times of the different variable selection and classification methods used in the real life example. †: 500 bootstrap trees per run.