From: Background correction using dinucleotide affinities improves the performance of GCRMA
Data set | nc a | np b | Â | Single nucleotide model (eq. 1) | Dinucleotide model (eq. 4)c |
---|---|---|---|---|---|
Latin Square [20] | 42 | 248152 | PM | 0.17 ± 0.01 | 0.22 ± 0.01 |
 |  | 248152 | MM | 0.40 ± 0.01 | 0.50 ± 0.01 |
Golden spikein [16] | 6 | 195994 | PM | 0.20 ± 0.02 | 0.22 ± 0.02 |
 |  | 195994 | MM | 0.46 ± 0.02 | 0.51 ± 0.02 |
Leukemia [35] | 72 | 201800 | PM | 0.49 ± 0.06 | 0.55 ± 0.07 |
 |  | 201800 | MM | 0.60 ± 0.04 | 0.69 ± 0.04 |
Etoposide response [34] | 60 | 496468 | PM | 0.05 ± 0.04 | 0.08 ± 0.06 |
 |  | 496468 | MM | 0.11 ± 0.06 | 0.16 ± 0.08 |
20 | 496468 | PM | 0.09 ± 0.04 | 0.13 ± 0.04 | |
 |  | 496468 | MM | 0.29 ± 0.050 | 0.36 ± 0.06 |