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Table 4 List of protein sequences from nr database which contain C-MT domains adjacent to the core NRPS domains

From: In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites

Gi. no.

Domains

Identity (%)

Template

Organism name

108809363

ACP-C-A-CMT-ACP-C

25

yersi01_CM_002

Yersinia pestis Antiqua

108809365

C-A-CMT

33

nodul02_CM_001

Yersinia pestis Antiqua

108813376

C-A-CMT

33

nodul02_CM_001

Yersinia pestis Nepal516

116215693

CMT-ACP-C-A-ACP-TE

47

yersi01_CM_002

Vibrio cholerae RC385

148271509

C-A-CMT-ACP

33

nodul02_CM_001

Clavibacter michiganensis subsp.michiganensis

153947007

C-A-CMT

33

nodul02_CM_001

Yersinia pseudotuberculosis IP 31758

153954130

ACP-C-A-CMT-ACP-C-ACP

29

nodul02_CM_001

Clostridium kluyveri DSM 555

16121089

C-A-CMT

33

nodul02_CM_001

Yersinia pestis CO92

16121091

ACP-C-A-CMT-ACP-C

25

yersi01_CM_002

Yersinia pestis CO92

17546530

C-A-CMT-ACP-TE

33

leina01_CM_001

Ralstonia solanacearum GMI1000

21225943

C-A-CMT-ACP

33

nodul02_CM_001

Streptomyces coelicolor A3(2)

22127285

ACP-C-A-CMT-ACP-C

25

yersi01_CM_002

Yersinia pestis KIM

26248281

ACP-C-CMT-ACP-TE

100

yersi01_CM_002

Escherichia coli CFT073

28869792

ACP-C-A-CMT-ACP-C-ACP

27

leina01_CM_001

Pseudomonas syringae pv. tomato str. DC3000

41409840

C-A-CMT

34

yersi01_CM_002

M. avium subsp. paratuberculosis K-10

45443170

C-A-CMT

33

nodul02_CM_001

Yersinia pestis biovar Microtus str. 91001

51597596

C-A-CMT

33

nodul02_CM_001

Yersinia pseudotuberculosis IP 32953

89102588

ACP-C-A-CMT-ACP-C

25

yersi01_CM_002

Yersinia pestis biovar Orientalis str. IP275

89895567

C-A-CMT

37

yersi01_CM_002

Desulfitobacterium hafniense Y51

90424526

C-A-CMT-ACP-TE

38

yersi01_CM_002

Rhodopseudomonas palustris BisB18

  1. List of protein sequences from nr database which contain C-MT domains adjacent to the core NRPS domains as identified by our MT HMM profile search. Gene identifier number, domain organization and organism name is listed in columns 1, 2 and 5. Columns 4 and 3 list the closest match (as identified by pair BLAST) with the representative MT domains from experimentally characterized NRPS/PKS clusters and the corresponding percentage identities.
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BMC Bioinformatics

ISSN: 1471-2105

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