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Table 1 Algorithm of SAP search

From: A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics

SAP_search(sm, γ):

 

   1. Graph construction.

• Remove edges having a weight of 1.

   2. Graph reduction:

• Remove edges for which the strength metric is lower than sm.

 

• Decompose the graph into its connected components.

   3. For each connected components, cluster_search(γ).

 

   4. Return the new graph.