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Table 3 Results using alternative MCC and alignment

From: RNAalifold: improved consensus structure prediction for RNA alignments

Program or variant MCC Other MCC Clustal MCC
RNAalifold 2002 0.831 0.814 0.708
RNAalifold new 0.845 0.819 0.711
RNAalifold RIBOSUM 0.937 0.871 0.788
RNAalifold 2002 centroid 0.828 0.815 0.693
RNAalifold new centroid 0.848 0.834 0.712
RNAalifold RIBOSUM centroid 0.934 0.896 0.780
Pfold 0.765 0.739 0.601
KNetFold 0.866 0.808 0.761
McC_mea 0.837 0.816 0.716
  1. Performance comparisons on the CMfinder-SARSE dataset. We list the mean MCC for different programs. Best performance indicated in bold. Other MCC is the variant counting every wrongly predicted pair as false positive, Clustal MCC is the MCC as introduced by Gardner et al. [39] applied to alignments realigned using Clustal [40].