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Table 1 The four possible CpN→TpN di-nucleotide RIP mutations and their reverse complements which form the basis for comparisons to determine the dominant form of RIP mutation in both alignment-based and statistical analyses.

From: RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

RIP Mutation

Reverse Complement*

CpA→TpA

TpG→TpA

CpC→TpC

GpG→GpA

CpG→TpG

CpG→CpA

CpT→TpT

ApG→ApA

  1. (*The forward orientation is often referred to in the text, however should be understood to include the reverse complement unless specified otherwise.)
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BMC Bioinformatics

ISSN: 1471-2105

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