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Table 2 Significance of location and orientation bias for selected motif-experiment pairs

From: Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation

Figure Description* Location p-val Orientation p-val Nr selected promoters
1 a ABF1_Lee reduce (cgtnnnnnntga) in ABF1_YPD 5.08E-10 1 547
1 b RAP1_YPD (ccrtaca) in RAP1_YPD 4.19e-3 1 408
1 c GCN4_Lee reduce (gagtca) in GCN4_YPD 1.94e-3 1 143
1 d MBP1_lee reduce (acgcgt) in MBP1_YPD 8.27e-4 1 227
1 e GAL4_lee reduce (cggnnnnnnnnnnnccg) in GAL4_RAFF 5.95e-3 1 71
4 a PAC_ESR reduce (cgatgag) in group 4 2.89e-3 2.35e-1 114
4 b rRPE_ESR reduce (aaaattt) in group 4 1.69e-12 1 114
4 c RAP1_YPD (ccrtaca) in group 1 6.51e-12 3.08e-8 138
4 d MBP1_lee reduce (acgcgt) in group 30 3.07e-14 1 52
  1. * Should be read as: <motif name and source> (<motif sequence>) in <experiment name>.