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Table 2 Significance of location and orientation bias for selected motif-experiment pairs

From: Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation

Figure

Description*

Location p-val

Orientation p-val

Nr selected promoters

1 a

ABF1_Lee reduce (cgtnnnnnntga) in ABF1_YPD

5.08E-10

1

547

1 b

RAP1_YPD (ccrtaca) in RAP1_YPD

4.19e-3

1

408

1 c

GCN4_Lee reduce (gagtca) in GCN4_YPD

1.94e-3

1

143

1 d

MBP1_lee reduce (acgcgt) in MBP1_YPD

8.27e-4

1

227

1 e

GAL4_lee reduce (cggnnnnnnnnnnnccg) in GAL4_RAFF

5.95e-3

1

71

4 a

PAC_ESR reduce (cgatgag) in group 4

2.89e-3

2.35e-1

114

4 b

rRPE_ESR reduce (aaaattt) in group 4

1.69e-12

1

114

4 c

RAP1_YPD (ccrtaca) in group 1

6.51e-12

3.08e-8

138

4 d

MBP1_lee reduce (acgcgt) in group 30

3.07e-14

1

52

  1. * Should be read as: <motif name and source> (<motif sequence>) in <experiment name>.