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Table 2 High SGPC pairs, prostate

From: Identifying differential correlation in gene/pathway combinations

Affy HGU95 ID Gene symbol KEGG ID Pathway description S GPC p
39637_at SLC26A2 00300 Lysine biosynthesis 0.928 <1e-04
39799_at FABP5 00300 Lysine biosynthesis 0.829 <1e-04
39794_at USP8 00300 Lysine biosynthesis 0.824 <1e-04
40773_at MYL5 00300 Lysine biosynthesis 0.82 <1e-04
40027_at ATP5S 00300 Lysine biosynthesis 0.814 1e-04
32001_s_at PCSK6 04742 Taste transduction 0.807 <1e-04
32001_s_at PCSK6 00600 Sphingolipid metabolism 0.799 <1e-04
32001_s_at PCSK6 05110 Cholera – Infection 0.798 1e-04
41275_at E2F5 00300 Lysine biosynthesis 0.798 3e-04
32001_s_at PCSK6 00604 Glycosphingolipid biosynthesis – ganglioseries 0.786 <1e-04
32001_s_at PCSK6 00061 Fatty acid biosynthesis 0.771 <1e-04
32001_s_at PCSK6 00290 Valine, leucine and isoleucine biosynthesis 0.771 <1e-04
39945_at FAP 00300 Lysine biosynthesis 0.768 6e-04
32001_s_at PCSK6 03060 Protein export 0.765 <1e-04
38571_at FGFR1OP 04740 Olfactory transduction 0.76 <1e-04
32001_s_at PCSK6 00190 Oxidative phosphorylation 0.751 <1e-04
38571_at FGFR1OP 00440 Aminophosphonate metabolism 0.749 <1e-04
40176_at TRIM27 00625 Tetrachloroethene degradation 0.742 <1e-04
38571_at FGFR1OP 04630 Jak-STAT signaling pathway 0.739 <1e-04
38571_at FGFR1OP 04020 Calcium signaling pathway 0.737 <1e-04
38571_at FGFR1OP 00150 Androgen and estrogen metabolism 0.734 <1e-04
38571_at FGFR1OP 04930 Type II diabetes mellitus 0.733 <1e-04
32001_s_at PCSK6 00930 Caprolactam degradation 0.732 1e-04
38571_at FGFR1OP 04340 Hedgehog signaling pathway 0.73 3e-04
38571_at FGFR1OP 00860 Porphyrin and chlorophyll metabolism 0.728 2e-04
32001_s_at PCSK6 00903 Limonene and pinene degradation 0.728 <1e-04
38571_at FGFR1OP 04650 Natural killer cell mediated cytotoxicity 0.724 2e-04
38571_at FGFR1OP 04810 Regulation of actin cytoskeleton 0.721 1e-04
38571_at FGFR1OP 01510 Neurodegenerative Disorders 0.721 <1e-04
40925_at C7orf44 00300 Lysine biosynthesis 0.72 1e-04
38571_at FGFR1OP 04660 T cell receptor signaling pathway 0.719 <1e-04
861_g_at MSH2 03020 RNA polymerase 0.713 <1e-04
38571_at FGFR1OP 00903 Limonene and pinene degradation 0.712 <1e-04
38571_at FGFR1OP 00290 Valine, leucine and isoleucine biosynthesis 0.711 2e-04
38571_at FGFR1OP 04920 Adipocytokine signaling pathway 0.71 <1e-04
38571_at FGFR1OP 00930 Caprolactam degradation 0.708 0.0013
32001_s_at PCSK6 00471 D-Glutamine and D-glutamate metabolism 0.707 <1e-04
38571_at FGFR1OP 00140 C21-Steroid hormone metabolism 0.706 1e-04
38571_at FGFR1OP 00562 Inositol phosphate metabolism 0.704 <1e-04
38571_at FGFR1OP 00604 Glycosphingolipid biosynthesis – ganglioseries 0.702 7e-04
  1. High-ranking gene-pathway pairs in prostate data, sorted by descending SGPC. Affymetrix ID, gene symbol, KEGG pathway ID, and pathway description are given, along with the GPC scores; p values are based on a permutation test with 104 resamplings.
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