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Table 2 High SGPC pairs, prostate

From: Identifying differential correlation in gene/pathway combinations

Affy HGU95 ID

Gene symbol

KEGG ID

Pathway description

S GPC

p

39637_at

SLC26A2

00300

Lysine biosynthesis

0.928

<1e-04

39799_at

FABP5

00300

Lysine biosynthesis

0.829

<1e-04

39794_at

USP8

00300

Lysine biosynthesis

0.824

<1e-04

40773_at

MYL5

00300

Lysine biosynthesis

0.82

<1e-04

40027_at

ATP5S

00300

Lysine biosynthesis

0.814

1e-04

32001_s_at

PCSK6

04742

Taste transduction

0.807

<1e-04

32001_s_at

PCSK6

00600

Sphingolipid metabolism

0.799

<1e-04

32001_s_at

PCSK6

05110

Cholera – Infection

0.798

1e-04

41275_at

E2F5

00300

Lysine biosynthesis

0.798

3e-04

32001_s_at

PCSK6

00604

Glycosphingolipid biosynthesis – ganglioseries

0.786

<1e-04

32001_s_at

PCSK6

00061

Fatty acid biosynthesis

0.771

<1e-04

32001_s_at

PCSK6

00290

Valine, leucine and isoleucine biosynthesis

0.771

<1e-04

39945_at

FAP

00300

Lysine biosynthesis

0.768

6e-04

32001_s_at

PCSK6

03060

Protein export

0.765

<1e-04

38571_at

FGFR1OP

04740

Olfactory transduction

0.76

<1e-04

32001_s_at

PCSK6

00190

Oxidative phosphorylation

0.751

<1e-04

38571_at

FGFR1OP

00440

Aminophosphonate metabolism

0.749

<1e-04

40176_at

TRIM27

00625

Tetrachloroethene degradation

0.742

<1e-04

38571_at

FGFR1OP

04630

Jak-STAT signaling pathway

0.739

<1e-04

38571_at

FGFR1OP

04020

Calcium signaling pathway

0.737

<1e-04

38571_at

FGFR1OP

00150

Androgen and estrogen metabolism

0.734

<1e-04

38571_at

FGFR1OP

04930

Type II diabetes mellitus

0.733

<1e-04

32001_s_at

PCSK6

00930

Caprolactam degradation

0.732

1e-04

38571_at

FGFR1OP

04340

Hedgehog signaling pathway

0.73

3e-04

38571_at

FGFR1OP

00860

Porphyrin and chlorophyll metabolism

0.728

2e-04

32001_s_at

PCSK6

00903

Limonene and pinene degradation

0.728

<1e-04

38571_at

FGFR1OP

04650

Natural killer cell mediated cytotoxicity

0.724

2e-04

38571_at

FGFR1OP

04810

Regulation of actin cytoskeleton

0.721

1e-04

38571_at

FGFR1OP

01510

Neurodegenerative Disorders

0.721

<1e-04

40925_at

C7orf44

00300

Lysine biosynthesis

0.72

1e-04

38571_at

FGFR1OP

04660

T cell receptor signaling pathway

0.719

<1e-04

861_g_at

MSH2

03020

RNA polymerase

0.713

<1e-04

38571_at

FGFR1OP

00903

Limonene and pinene degradation

0.712

<1e-04

38571_at

FGFR1OP

00290

Valine, leucine and isoleucine biosynthesis

0.711

2e-04

38571_at

FGFR1OP

04920

Adipocytokine signaling pathway

0.71

<1e-04

38571_at

FGFR1OP

00930

Caprolactam degradation

0.708

0.0013

32001_s_at

PCSK6

00471

D-Glutamine and D-glutamate metabolism

0.707

<1e-04

38571_at

FGFR1OP

00140

C21-Steroid hormone metabolism

0.706

1e-04

38571_at

FGFR1OP

00562

Inositol phosphate metabolism

0.704

<1e-04

38571_at

FGFR1OP

00604

Glycosphingolipid biosynthesis – ganglioseries

0.702

7e-04

  1. High-ranking gene-pathway pairs in prostate data, sorted by descending SGPC. Affymetrix ID, gene symbol, KEGG pathway ID, and pathway description are given, along with the GPC scores; p values are based on a permutation test with 104 resamplings.