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Figure 4 | BMC Bioinformatics

Figure 4

From: CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

Figure 4

Page 6 screen-shot of a conserved MyoD TFBS in the LAMA4 promoter. Page 6 of CORE_TF displays two identical boxes containing aligned promoters with conserved matrices highlighted by color; blue if on the positive strand, purple if on both strands, and red if on the negative strand. If requested in the previous page to show run details (not shown in this figure), boxes with score construction for all conserved TFBS are also displayed, as well as the patterns of all selected matrices hit. Here we show an example of a MyoD TFBS (matrix MyoD_Q6_01) in the LAMA4 promoter conserved in human, chimp, and dog on both strands.

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BMC Bioinformatics

ISSN: 1471-2105

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