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Table 2 Orthologous conservation of target TFBS in target genes

From: CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

A

      

Gene Name

GeneID

TF Name

Tot. Score

Score

#Promos

Length

Chrng

ENSMUSG00000026253

MYOGENIN_Q6

1

1000

5

10

Chrng

ENSMUSG00000026253

MYOGENIN_Q6

1

1000

5

10

Tnnt3

ENSMUSG00000061723

MYOGENIN_Q6

1

1000

2

10

Tnnc2

ENSMUSG00000017300

MYOGENIN_Q6

1

800

2

8

Tnni1

ENSMUSG00000026418

MYOGENIN_Q6

1

800

2

8

Myog

ENSMUSG00000026459

MYOGENIN_Q6

0.83

666.7

5

8

Acta1

ENSMUSG00000031972

MYOGENIN_Q6

0.8

640

4

8

Tnnc1

ENSMUSG00000021909

MYOGENIN_Q6

0.72

720

4

10

Acta1

ENSMUSG00000031972

MYOGENIN_Q6

0.6

480

3

8

B

      

Gene Name

GeneID

TF Name

Tot. Score

Score

#Promos

Length

Rgs16

ENSMUSG00000026475

MYOD_01

1

1200

4

12

Rgs16

ENSMUSG00000026475

MYOD_01

0.5

600

2

12

Nptx1

ENSMUSG00000025582

MYOD_01

0.4

840

2

21

Nptx1

ENSMUSG00000025582

MYOD_01

0.4

480

2

12

  1. Conserved TFBS for (A) Myog (matrix MYOGENIN_Q6) and (B) MyoD (matrix MYOD_01) from target genes' promoters in expression data. Total score represents a score of conservation from 0 to 1 over the conserved TFBS length. Score represents an additive score over the binding site. # Promos is the number of promoters with the conserved TFBS. Length is the length of the TFBS.