Prediction of glycosylation sites using random forests

BMC Bioinformatics

Table 3 Frequencies of selected amino acids surrounding modified Thr residues

position	-7	-6	-5	-4	-3	-2	-1	1	2	3	4	5	6	7
G	52	40	108	42	21	122	32	101	40	16	106	30	37	112
I	20	16	16	33	23	40	14	17	17	13	18	29	14	18
P	77	61	81	67	99	62	128	103	68	167	59	105	59	89
R	33	22	17	28	8	13	21	11	25	9	15	30	30	16
S	81	67	65	68	74	70	89	67	76	74	63	59	52	70
T	101	168	96	130	117	115	107	95	118	131	127	95	156	87
W	2	10	4	1	2	4	2	2	5	2	3	0	0	0

Frequency is reported as the number of occurrences in the set of 2010 instances of modified Thr residues. Statistically significant increases over the expected frequencies are represented in bold; significant decreases are represented by italics. The full table containing all amino acids is included in additional file 3.

ISSN: 1471-2105