From: Microarray-based gene set analysis: a comparison of current methods
Top Pathways | NP | AP |
---|---|---|
GSEA-Category | Â | Â |
   OXPHOS_HG-U133A_probes | 0.071 | 1 |
   MAP00480_Glutathione_metabolism | 0.091 | 1 |
   MAP00500_Starch_and_sucrose_metabolism | 0.19 | 1 |
   MAP00252_Alanine_and_aspartate_metabolism | 0.199 | 1 |
   GLUCO_HG-U133A_probes | 0.202 | 1 |
   ...... | ... | ... |
GSEA-limma | Â | Â |
   OXPHOS_HG-U133A_probes | <0.001 | <0.001 |
   c18_U133_probes | 0.004 | 0.88 |
   Human_mitoDB_6_2002_HG-U133A_probes | 0.006 | 0.88 |
   Mitochondr_HG-U133A_probes | 0.01 | 1 |
   MAP00190_Oxidative_phosphorylation | 0.018 | 1 |
   ...... | ... | ... |
SAFE | Â | Â |
   MAP00561_Glycerolipid_metabolism | 0.011 | 1 |
   OXPHOS_HG-U133A_probes | 0.021 | 1 |
   MAP00500_Starch_and_sucrose_metabolism | 0.035 | 1 |
   MAP00240_Pyrimidine_metabolism | 0.046 | 1 |
   GLUCO_HG-U133A_probes | 0.049 | 1 |
   ...... | ... | ... |
GlobalTest | Â | Â |
   MAP00252_Alanine_and_aspartate_meta... | 0.106 | 1 |
   OXPHOS_HG-U133A_probes | 0.123 | 1 |
   c23_U133_probes | 0.14 | 1 |
   c25_U133_probes | 0.144 | 1 |
   GLUCO_HG-U133A_probes | 0.144 | 1 |
   ...... | ... | ... |
PCOT2 | Â | Â |
   c20_U133_probes | 0.032 | 1 |
   OXPHOS_HG-U133A_probes | 0.045 | 1 |
   MAP00190_Oxidative_phosphorylation | 0.06 | 1 |
   FA_HG-U133A_probes | 0.086 | 1 |
   c28_U133_probes | 0.093 | 1 |
   ...... | ... | ... |
sigPathway | Â | Â |
   c22_U133_probes | 0.012 | 1 |
   c29_U133_probes | 0.014 | 1 |
   OXPHOS_HG-U133A_probes | 0.014 | 1 |
   c25_U133_probes | 0.032 | 1 |
   MAP00252_Alanine_and_aspartate_metabolism | 0.088 | 1 |
   ...... | ... | ... |