From: c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
TF | Motif | Condition | c-REDUCE | f-REDUCE |
---|---|---|---|---|
PUT3 | CGGN(11)CCG | YPD | Â | 1: GVVCG 35.2 |
 |  |  |  | 2: CVCVG 15.1 |
 |  | H2O2Lo |  |  |
 |  | SM |  |  |
RGT1 | CGGANNA/TNNTCCG | YPD | Â | 2: CCHCV 10.8 |
 |  | GAL |  |  |
RIM101 | TCGGAAG/CTTCCGA | YPD | Â | Â |
 |  | H2O2Lo |  |  |
 |  | H2O2Hi |  |  |
RLM1 | CTAWWWWTAG/ | YPD | 1: TATTT 11.8 | 1: DTTWA 24.4 |
 | CTAWWWWTAG |  | 2: AARAW 7.5 | 2: AAVHTA 10.9 |
 |  |  | 3: RAWTT 5.7 |  |
 |  |  | 5: TTTYY 4.0 |  |
 |  | BUT14 |  |  |
ROX1 | YSYATTGTT/AACAATRSR | YPD | Â | Â |
 |  | H2O2Lo |  |  |
 |  | H2O2Hi |  |  |
RPH1 | CCCCTTAAGG/ | YPD | Â | Â |
 | CCTTAAGGGG | H2O2Lo |  |  |
 |  | H2O2Hi | 1: CCCCT 16.1 |  |
 |  |  | 3: AAGGGG 3.8 |  |
 |  | SM |  |  |
RTG3 | GGTCAC/GTGACC | YPD | Â | Â |
 |  | H2O2LO |  |  |
 |  | H2O2HI |  |  |
 |  | RAPA | 4: RTGAC 2.6 |  |
 |  | SM |  |  |
SKO1 | ACGTCA/TGACGT | YPD | 2: ACGTCAT 5.1 | 1: VCGBC 19.0 |
 |  |  |  | 4: ATGACGT 3.1 |
SMP1 | ACTACTAWWWWTAG/ | YPD | 3: TTAATAG 6.3 | 2: TTTHA 9.4 |
 | CTAWWWWTAGTAGT |  |  |  |
STP1 | RCGGCNNNRCGGC/ | YPD | Â | Â |
 | GCCGYNNNNGCCGY | SM | 2: CGGCAY 3.0 |  |
 |  |  | 4: TMAGR 2.7 |  |
 |  |  | 5: RCGGY 2.2 |  |
SWI5 | KGCTGR/YCAGCM | YPD | 3: TGGCTGG 2.5 | 2: CBDGC 4.7 |
 |  |  |  | 3: GKSTG 1.4 |
UGA3 | CCGNNNNCGG | YPD | Â | Â |
 |  | RAPA |  |  |
 |  | SM |  |  |
XBP1 | CTTCGAG/CTCGAAG | YPD | Â | Â |
 |  | H2O2Lo | 1: TCGAG 27.9 |  |
 |  |  | 5: TCGAR 7.3 |  |
YAP3 | TTACTAA/TTAGTAA | YPD | Â | Â |
 |  | H2O2Hi |  |  |
YAP5 | TTACTAA/TTAGTAA | YPD | Â | Â |
 |  | H2O2Hi |  |  |
YAP6 | TTACTAA/TTAGTAA | YPD | Â | Â |
 |  | H2O2Lo |  |  |
 |  | H2O2Hi |  |  |
YHP1 | TAATTG/CAATTA | YPD | Â | Â |
YOX1 | YAATA/TATTR | YPD | Â | Â |