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Table 5 c-REDUCE results on Dorsal expression study.

From: c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression

Experiment

Oligo

Rank

-log10(p-value)

high vs none

ATRTCCY

1

20.1

 

KGR AGAT

2

8.4

 

GG TRKT

3

6.5

high vs low

ATRTCCY

1

43.1

 

TGG TRKT

2

33.7

low vs none

GG AAARS

1

5.5

 

KGR AGAT

4

2.7

  1. The first column shows the pair-wise mutant comparisons (see text). Columns 2–4 list predicted oligos that match the Dorsal motif, their rank and -log10(p-value) respectively. Positions in bold indicate matches to the flanking GGG/CCC or KGG/CCM part of the consensus Dorsal motifs (GGGWWWWCCM or GGGWDWWWCCM [25]).