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Table 6 Examples of consensus construction.

From: c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression

 

Position

 

1

2

3

4

5

6

7

Scer

A

A

G

C

A

A

-

Spar

A

A

G

N

N

-

T

Smik

A

A

-

N

N

*

*

Skud

A

T

-

N

-

*

*

Sbay

A

T

-

N

-

*

*

Consensus

A

W

-

N

-

A

-

  1. Sequences (rows) are from the yeast species, S. cerevisiae (Scer), S. paradoxus (Spar), S. mikatae (Smik), S. kudriavzevii (Skud) and S. bayanus (Sbay). An asterisk indicates that there are no sequences from that species that could be aligned.
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BMC Bioinformatics

ISSN: 1471-2105

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