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Table 3 Overlap between true positive (TP) sets produced by Williamson and SMERFS. True positive sets were created by applying a threshold corresponding to a false positive rate of 0.1 in both measures, as detailed in Methods.

From: The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction

Site Type

SMERFS only

Overlap

Williamson only

Domain-Small Molecule

3515

921

3850

Domain-domain

6989

1995

8204

Combined

9945

2183

8990