|
Average ROC and ROC50 scores
|
|---|
|
Methods
|
ROC
|
ROC50
|
Source
|
|
SVM-Top-n-gram
| | | |
|
n = 1
|
0.9069
|
0.696
| |
|
n = 2
|
0.9230
|
0.713
| |
|
n = 3
|
0.9073
|
0.653
| |
|
SVM-Top-n-gram-combine
|
0.9329
|
0.763
| |
|
SVM-Bprofile(Ph = 0.13)
|
0.9032
|
0.681
|
[28]
|
|
SVM-Ngram
|
0.7914
|
0.584
|
[32]
|
|
SVM-Pattern
|
0.8354
|
0.589
|
[32]
|
|
SVM-Motif
|
0.8136
|
0.616
|
[32]
|
|
SVM-Top-n-gram-combine-LSA
|
0.9390
|
0.767
| |
|
SVM-Bprofile-LSA(Ph = 0.13)
|
0.9210
|
0.698
|
[28]
|
|
SVM-Ngram-LSA
|
0.8595
|
0.628
|
[32]
|
|
SVM-Pattern-LSA
|
0.8789
|
0.626
|
[32]
|
|
SVM-Motif-LSA
|
0.8592
|
0.628
|
[32]
|
|
PSI-BLAST
|
0.6754
|
0.330
|
[32]
|
|
SVM-Pairwise
|
0.8960
|
0.464
|
[11]
|
|
SVM-LA(β = 0.5)
|
0.9250
|
0.649
|
[11]
|
|
Profile(5,7.5)
|
0.9800
|
0.794
|
[10]
|
|
SW-PSSM(3.0,0.750,1.50)
|
0.9820
|
0.904
|
[10]
|
- SVM-Ngram, SVM-Pattern, SVM-Motif, SVM-Bprofile and SVM-Top-n-gram refer to the methods based on the five building blocks: N-grams, patterns, motifs, binary profiles and Top-n-grams respectively. The methods with combine suffix refer to the methods combining Top-1-grams and Top-2-grams. The methods with LSA suffix refer to the corresponding methods after latent semantic analysis. Source is the sources of results.
