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Figure 2 | BMC Bioinformatics

Figure 2

From: The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation

Figure 2

CatFam performance evaluation. The performance of CatFam is measured by precision and recall, which are defined as precision = TP/(TP+FP) and recall = TP/(TP+FN), where TP, FP and FN represent the number of true-positive, false-positive, and false-negative predictions, respectively. A total of 18,949 proteins, not used for profile generation, are used to evaluate two CatFam databases, CatFam-3D and CatFam-4D, which predict 3-digit and 4-digit EC numbers for query proteins, respectively. The results are sorted according to the maximum sequence identity between the query protein and the proteins used for profile generation.

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