Definition of the target region to be scanned by Cofolga2. The conserved sequences are indicated by boxes, and matching sequences are represented by arrows. In this figure, Genome A conrresponds to S. cerevisiae, and Genome B corresponds to an other fungal genome. Dashed lines indicate the sequences belonging to the target region. A situation such that the arrows are crossing each other is not allowed. If a part of intergenic, orf_coding, or rna_coding region overlaps the conserved region, the overlapped part is excluded from the target region.