Figure 4From: An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeastDefinition of the target region to be scanned by Cofolga2. The conserved sequences are indicated by boxes, and matching sequences are represented by arrows. In this figure, Genome A conrresponds to S. cerevisiae, and Genome B corresponds to an other fungal genome. Dashed lines indicate the sequences belonging to the target region. A situation such that the arrows are crossing each other is not allowed. If a part of intergenic, orf_coding, or rna_coding region overlaps the conserved region, the overlapped part is excluded from the target region.Back to article page