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Figure 6 | BMC Bioinformatics

Figure 6

From: Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score

Figure 6

Two examples showing the structural alignments from Fr-TM-align and TM-align. A) The structural alignment between 2GZQ_A (186 residues) and 1A1M_B (99 residues). B) The structural alignment between 1AOL (228 residues) and 1AKP (114 residues). The first row shows the ribbon diagrams of the native structures. The beta-sheets in the native structures are colored in cyan to highlight the structurally similar region, while the remainder of the structure is transparent gray. The second row is the structural alignment given by TM-align and Fr-TM-align. L denotes the number of aligned residues. The longer of the two proteins is shown in light green color and the smaller protein is shown in light yellow color. The aligned (unaligned) regions are shown in the thick backbone (thin) backbone.

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