Table 3 RE BLOSUM 62 matrix for alphabet Σ20 × Σ16
From: Optimal neighborhood indexing for protein similarity search
C | F | Y | W | M | L | I | V | G | P | A | T | S | N | H | Q | E | D | R | K | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[C] | 9 | -2 | -2 | -2 | -1 | -1 | -1 | -1 | -3 | -3 | 0 | -1 | -1 | -3 | -3 | -3 | -4 | -3 | -3 | -3 |
[FY] | -2 | 5 | 5 | 1 | 0 | 0 | -1 | -1 | -3 | -3 | -2 | -2 | -2 | -3 | 0 | -2 | -3 | -3 | -2 | -3 |
[W] | -2 | 1 | 2 | 11 | -1 | -2 | -3 | -3 | -2 | -4 | -3 | -2 | -3 | -4 | -2 | -2 | -3 | -4 | -3 | -3 |
[ML] | -1 | 0 | -1 | -2 | 3 | 4 | 1 | 1 | -3 | -3 | -1 | -1 | -2 | -3 | -2 | -2 | -3 | -3 | -2 | -2 |
[IV] | -1 | 0 | -1 | -3 | 1 | 1 | 3 | 3 | -3 | -3 | -1 | 0 | -2 | -3 | -3 | -2 | -3 | -3 | -3 | -2 |
[G] | -3 | -3 | -3 | -2 | -3 | -4 | -4 | -3 | 6 | -2 | 0 | -2 | 0 | 0 | -2 | -2 | -2 | -1 | -2 | -2 |
[P] | -3 | -4 | -3 | -4 | -2 | -3 | -3 | -2 | -2 | 7 | -1 | -1 | -1 | -2 | -2 | -1 | -1 | -1 | -2 | -1 |
[A] | 0 | -2 | -2 | -3 | -1 | -1 | -1 | 0 | 0 | -1 | 4 | 0 | 1 | -2 | -2 | -1 | -1 | -2 | -1 | -1 |
[T] | -1 | -2 | -2 | -2 | -1 | -1 | -1 | 0 | -2 | -1 | 0 | 5 | 1 | 0 | -2 | -1 | -1 | -1 | -1 | -1 |
[S] | -1 | -2 | -2 | -3 | -1 | -2 | -2 | -2 | 0 | -1 | 1 | 1 | 4 | 1 | -1 | 0 | 0 | 0 | -1 | 0 |
[N] | -3 | -3 | -2 | -4 | -2 | -3 | -3 | -3 | 0 | -2 | -2 | 0 | 1 | 6 | 1 | 0 | 0 | 1 | 0 | 0 |
[H] | -3 | -1 | 2 | -2 | -2 | -3 | -3 | -3 | -2 | -2 | -2 | -2 | -1 | 1 | 8 | 0 | 0 | -1 | 0 | -1 |
[QE] | -3 | -3 | -2 | -2 | -1 | -3 | -3 | -2 | -2 | -1 | -1 | -1 | 0 | 0 | 0 | 4 | 4 | 1 | 0 | 1 |
[D] | -3 | -3 | -3 | -4 | -3 | -4 | -3 | -3 | -1 | -1 | -2 | -1 | 0 | 1 | -1 | 0 | 2 | 6 | -2 | -1 |
[R] | -3 | -3 | -2 | -3 | -1 | -2 | -3 | -3 | -2 | -2 | -1 | -1 | -1 | 0 | 0 | 1 | 0 | -2 | 5 | 2 |
[K] | -3 | -3 | -2 | -3 | -1 | -2 | -3 | -2 | -2 | -1 | -1 | -1 | 0 | 0 | -1 | 1 | 1 | -1 | 2 | 5 |