From: Optimal neighborhood indexing for protein similarity search
C | F | Y | W | M | L | I | V | G | P | A | T | S | N | H | Q | E | D | R | K | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[CF Y W ] | 4 | 4 | 4 | 5 | -1 | 0 | -1 | -1 | -3 | -3 | -2 | -2 | -2 | -3 | 0 | -2 | -3 | -3 | -3 | -3 |
[M LIV ] | -1 | 0 | -1 | -2 | 2 | 3 | 3 | 2 | -3 | -3 | -1 | -1 | -2 | -3 | -3 | -2 | -3 | -3 | -2 | -2 |
[G] | -3 | -3 | -3 | -2 | -3 | -4 | -4 | -3 | 6 | -2 | 0 | -2 | 0 | 0 | -2 | -2 | -2 | -1 | -2 | -2 |
[P ] | -3 | -4 | -3 | -4 | -2 | -3 | -3 | -2 | -2 | 7 | -1 | -1 | -1 | -2 | -2 | -1 | -1 | -1 | -2 | -1 |
[AT S] | -1 | -2 | -2 | -3 | -1 | -2 | -1 | -1 | 0 | -1 | 2 | 2 | 2 | 0 | -1 | -1 | -1 | -1 | -1 | -1 |
[N H] | -3 | -2 | 0 | -3 | -2 | -3 | -3 | -3 | -1 | -2 | -2 | -1 | 0 | 5 | 5 | 0 | 0 | 1 | 0 | 0 |
[QED] | -3 | -3 | -2 | -3 | -2 | -3 | -3 | -3 | -2 | -1 | -1 | -1 | 0 | 0 | 0 | 3 | 3 | 4 | 0 | 0 |
[RK] | -3 | -3 | -2 | -3 | -1 | -2 | -3 | -2 | -2 | -1 | -1 | -1 | 0 | 0 | 0 | 1 | 0 | -1 | 4 | 4 |