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Table 4 RE BLOSUM 62 matrix for alphabet Σ20 × Σ8

From: Optimal neighborhood indexing for protein similarity search

  C F Y W M L I V G P A T S N H Q E D R K
[CF Y W ] 4 4 4 5 -1 0 -1 -1 -3 -3 -2 -2 -2 -3 0 -2 -3 -3 -3 -3
[M LIV ] -1 0 -1 -2 2 3 3 2 -3 -3 -1 -1 -2 -3 -3 -2 -3 -3 -2 -2
[G] -3 -3 -3 -2 -3 -4 -4 -3 6 -2 0 -2 0 0 -2 -2 -2 -1 -2 -2
[P ] -3 -4 -3 -4 -2 -3 -3 -2 -2 7 -1 -1 -1 -2 -2 -1 -1 -1 -2 -1
[AT S] -1 -2 -2 -3 -1 -2 -1 -1 0 -1 2 2 2 0 -1 -1 -1 -1 -1 -1
[N H] -3 -2 0 -3 -2 -3 -3 -3 -1 -2 -2 -1 0 5 5 0 0 1 0 0
[QED] -3 -3 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 0 3 3 4 0 0
[RK] -3 -3 -2 -3 -1 -2 -3 -2 -2 -1 -1 -1 0 0 0 1 0 -1 4 4
  1. RE BLOSUM 62 matrix for alphabet Σ20 × Σ8. Scores located on the "diagonal" are shown in bold.