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Table 4 RE BLOSUM 62 matrix for alphabet Σ20 × Σ8

From: Optimal neighborhood indexing for protein similarity search

 

C

F

Y

W

M

L

I

V

G

P

A

T

S

N

H

Q

E

D

R

K

[CF Y W ]

4

4

4

5

-1

0

-1

-1

-3

-3

-2

-2

-2

-3

0

-2

-3

-3

-3

-3

[M LIV ]

-1

0

-1

-2

2

3

3

2

-3

-3

-1

-1

-2

-3

-3

-2

-3

-3

-2

-2

[G]

-3

-3

-3

-2

-3

-4

-4

-3

6

-2

0

-2

0

0

-2

-2

-2

-1

-2

-2

[P ]

-3

-4

-3

-4

-2

-3

-3

-2

-2

7

-1

-1

-1

-2

-2

-1

-1

-1

-2

-1

[AT S]

-1

-2

-2

-3

-1

-2

-1

-1

0

-1

2

2

2

0

-1

-1

-1

-1

-1

-1

[N H]

-3

-2

0

-3

-2

-3

-3

-3

-1

-2

-2

-1

0

5

5

0

0

1

0

0

[QED]

-3

-3

-2

-3

-2

-3

-3

-3

-2

-1

-1

-1

0

0

0

3

3

4

0

0

[RK]

-3

-3

-2

-3

-1

-2

-3

-2

-2

-1

-1

-1

0

0

0

1

0

-1

4

4

  1. RE BLOSUM 62 matrix for alphabet Σ20 × Σ8. Scores located on the "diagonal" are shown in bold.