Table 5 RE BLOSUM 62 matrix for alphabet Σ20 × Σ4
From: Optimal neighborhood indexing for protein similarity search
C | F | Y | W | M | L | I | V | G | P | A | T | S | N | H | Q | E | D | R | K | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[CF Y W ] | 6 | 6 | 6 | 7 | -1 | -1 | -1 | -2 | -4 | -5 | -2 | -3 | -3 | -4 | -1 | -4 | -4 | -5 | -4 | -4 |
[M LIV ] | -2 | 0 | -2 | -3 | 3 | 4 | 4 | 4 | -5 | -4 | -1 | -1 | -3 | -5 | -4 | -3 | -4 | -5 | -4 | -3 |
[GP AT S] | -2 | -4 | -3 | -4 | -2 | -3 | -3 | -2 | 4 | 4 | 3 | 2 | 2 | -1 | 2- | -1 | -1 | -2 | -2 | -1 |
[N HQEDRK] | -5 | -4 | -2 | -4 | -3 | -4 | -5 | -4 | -2 | -2 | -2 | -1 | 0 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |