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Table 5 RE BLOSUM 62 matrix for alphabet Σ20 × Σ4

From: Optimal neighborhood indexing for protein similarity search

  C F Y W M L I V G P A T S N H Q E D R K
[CF Y W ] 6 6 6 7 -1 -1 -1 -2 -4 -5 -2 -3 -3 -4 -1 -4 -4 -5 -4 -4
[M LIV ] -2 0 -2 -3 3 4 4 4 -5 -4 -1 -1 -3 -5 -4 -3 -4 -5 -4 -3
[GP AT S] -2 -4 -3 -4 -2 -3 -3 -2 4 4 3 2 2 -1 2- -1 -1 -2 -2 -1
[N HQEDRK] -5 -4 -2 -4 -3 -4 -5 -4 -2 -2 -2 -1 0 3 3 3 3 3 3 3
  1. RE BLOSUM 62 matrix for alphabet Σ20 × Σ4. Scores located on the "diagonal" are shown in bold.