Table 2 Results obtained by various haplotyping software on the experimentally determined ApoE dataset.
From: Shape-IT: new rapid and accurate algorithm for haplotype inference
ApoE | 0%MD | 5%MD | |||
|---|---|---|---|---|---|
IER | IF | IER | MER | IF | |
2snp | 20.0 | 83.8 | 22.7 | 7.3 | 83.9 |
Fastphase | 11.3 | 89.4 | 17.4 | 6.1 | 87.5 |
Gerbil | 20.0 | 81.3 | 20.3 | 6.6 | 84.6 |
Ishape | 5.6 | 94.1 | 10.2 | 5.9 | 92.5 |
Shape-IT | 5.6 | 94.1 | 10.5 | 6.2 | 92.4 |
Phase v2.1 | 5.8 | 94.0 | 10.2 | 5.8 | 92.4 |
PLEM | 12.5 | 89.8 | 16.0 | 6.5 | 88.7 |