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Table 3 Results obtained by various haplotyping software on the experimentally determined GH1 dataset.

From: Shape-IT: new rapid and accurate algorithm for haplotype inference

GH1 0%MD 5%MD
  IER IF IER MER IF
2snp 15.7 88.2 22.0 7.5 88.3
Fastphase 10.5 92.5 17.3 4.5 90.7
Gerbil 11.8 92.8 16.7 4.2 91.6
Ishape 10.1 93.8 15.0 4.5 92.6
Shape-IT 10.3 93.6 14.9 4.5 92.5
Phase v2.1 10.3 93.7 15.2 4.5 92.5
PLEM 12.4 90.3 17.2 4.8 89.4
  1. For the various software tested, we measured the percentage of individuals incorrectly reconstructed (IER), the percentage of missing data incorrectly inferred (MER), and the distance between real and inferred haplotype frequencies (IF) on the GH1 with complete genotypes and 5% random missing genotypes.