Table 3 Results obtained by various haplotyping software on the experimentally determined GH1 dataset.
From: Shape-IT: new rapid and accurate algorithm for haplotype inference
GH1 | 0%MD | 5%MD | |||
|---|---|---|---|---|---|
IER | IF | IER | MER | IF | |
2snp | 15.7 | 88.2 | 22.0 | 7.5 | 88.3 |
Fastphase | 10.5 | 92.5 | 17.3 | 4.5 | 90.7 |
Gerbil | 11.8 | 92.8 | 16.7 | 4.2 | 91.6 |
Ishape | 10.1 | 93.8 | 15.0 | 4.5 | 92.6 |
Shape-IT | 10.3 | 93.6 | 14.9 | 4.5 | 92.5 |
Phase v2.1 | 10.3 | 93.7 | 15.2 | 4.5 | 92.5 |
PLEM | 12.4 | 90.3 | 17.2 | 4.8 | 89.4 |