#SNPs | #genotypes | Fastphase | Ishape | Shape-IT | Phase v2.1 |
---|
50 | 100 | 10 | 29 | 10 | 151 |
100 | 100 | 6 | 37 | 12 | 519 |
200 | 100 | 6 | 41 | 19 | 3,137 |
50 | 200 | 21 | 34 | 13 | 443 |
100 | 200 | 21 | 119 | 29 | 2,739 |
200 | 200 | 21 | 124 | 37 | 7,601 |
50 | 300 | 37 | 113 | 28 | 1,372 |
100 | 300 | 41 | 268 | 52 | 6,514 |
200 | 300 | 42 | 261 | 81 | 12,757 |
- Estimations of the running times in days of the 4 most accurate software (Phase v2.1, Ishape, Fastphase and Shape-IT) to infer the haplotypes for 100, 200, or 300 genotypes derived from Illumina 300 k chips partitioned into segments of either 50 SNPs, or 100 SNPs, or 200 SNPs. For each combination #SNPs #genotypes, the running time estimations were extrapolated from the measures performed on 10 datasets extracted from the GRIV cohort 300 K Illumina chip genomic data.