#SNPs
|
#genotypes
|
Fastphase
|
Ishape
|
Shape-IT
|
Phase v2.1
|
---|
50
|
100
|
10
|
29
|
10
|
151
|
100
|
100
|
6
|
37
|
12
|
519
|
200
|
100
|
6
|
41
|
19
|
3,137
|
50
|
200
|
21
|
34
|
13
|
443
|
100
|
200
|
21
|
119
|
29
|
2,739
|
200
|
200
|
21
|
124
|
37
|
7,601
|
50
|
300
|
37
|
113
|
28
|
1,372
|
100
|
300
|
41
|
268
|
52
|
6,514
|
200
|
300
|
42
|
261
|
81
|
12,757
|
- Estimations of the running times in days of the 4 most accurate software (Phase v2.1, Ishape, Fastphase and Shape-IT) to infer the haplotypes for 100, 200, or 300 genotypes derived from Illumina 300 k chips partitioned into segments of either 50 SNPs, or 100 SNPs, or 200 SNPs. For each combination #SNPs #genotypes, the running time estimations were extrapolated from the measures performed on 10 datasets extracted from the GRIV cohort 300 K Illumina chip genomic data.