Figure 7
From: PocketMatch: A new algorithm to compare binding sites in protein structures
Detection of part-similarities by PocketMatch. Examples illustrating binding of different ligands in essentially the same binding pocket, but with different orientations. The part-similarities in these were identified correctly by PocketMatch. Binding of different trypsin inhibitors (stick models) complexed to trypsin variants (wire) as in PDB entries (a) 1GJC and 1V2Q and (b) 1GJC and 2AYW.