Table 1 The results of 100 HMM-SA runs.
From: Prediction of regulatory elements in mammalian genomes using chromatin signatures
Combination | Â | Â |
|---|---|---|
H4ac, H3ac, H3Kme1, H3K4me2, H3K4me3, H3 | 43 | 98.8%/94.5% |
H3Kme1, H3K4me2, H3K4me3, H3 | 8 | 99.1%/93.2% |
H4ac, H3ac, H3Kme1, H3K4me2, H3 | 6 | 99.1%/94.1% |
H3Kme1, H3K4me2 | 6 | 99.7%/92.8% |
H4ac, H3Kme1, H3K4me2, H3K4me3, | 5 | 100%/93.5% |
H3Kme1, H3K4me2, H3K4me3, H3 | 5 | 100%/93.0% |
H3ac, H3Kme1, H3K4me2, H3K4me3, H3 | 5 | 99.2%/94.6% |
H3Kme1, H3K4me2, H3K4me3 | 5 | 99.6%/94.6% |
H4ac, H3Kme1, H3K4me2, H3 | 4 | 100.0%/93.2% |
H4ac, H3ac, H3Kme1, H3K4me2, H3K4me3 | 3 | 98.1%/94.6% |
H4ac, H3Kme1, H3K4me2 | 3 | 100%/94.6% |
H4ac, H3ac, H3Kme1, H3K4me3, H3 | 2 | 97.2%/93.2% |
H3Kme1, H3K4me2, H3 | 2 | 100.0%/93.2% |
H4ac, H3K4me3 | 1 | 96.2%/91.9% |
H3ac, H3Kme1, H3K4me2 | 1 | 98.1%/94.6% |
H3ac, H3Kme1, H3K4me2, H3 | 1 | 100.0%/94.6% |
Window Size | Number of times used | Prediction rate (promoter/enhancer) |
1 K | 8 | 99.3%/93.6% |
2 K | 75 | 99.0%/94.3% |
4 K | 7 | 99.7%/93.4% |
8 K | 7 | 99.5%/93.1% |
10 K | 2 | 100%/91.9% |
12 K | 1 | 98.1%/89.2% |