Table 6 Comparison of enhancer predictions in the untreated Hela cells.
From: Prediction of regulatory elements in mammalian genomes using chromatin signatures
| Â | Heintzman et al. [15] total 389 prediction | HMM method total 389 prediction |
|---|---|---|
distal p300 (n = 94) | 77 (sensitivity = 81.91%) | 82 (sensitivity = 87.23%) |
distal DHS (n = 587) | 165 (sensitivity = 28.11%) | 179 (sensitivity = 30.49%) |
Distal TRAP220 (n = 77) | 43 (sensitivity = 55.84%) | 47 (sensitivity = 61.04%) |
Any of distal (DHS, p300, TRAP220) | 206 (PPV = 52.96%) | 213 (PPV = 54.76%) |