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Table 4 Exponentiation of individual matrices from protein coding exons from a triad of microbial species.

From: Pathological rate matrices: from primates to pathogens

Fit1 Data Norm2 Cond2 ϵTAYL2 ϵEIG2 ϵPADÉ2 E T A Y L 3 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeCyrau0aa0baaSqaaiabdsfaujabdgeabjabdMfazjabdYeambqaaiabiodaZaaaaaa@32A5@ E E I G 3 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeCyrau0aa0baaSqaaiabhweafjabhMeajjabhEeahbqaaiabiodaZaaaaaa@315E@ EPADÉ3 N4
expPADÉ Dinuc 1+2 (0.13, 3.7e+02) (10, 1.3e+18) (6.2e-06, 1.2e+137) (6.2e-06, 86) (6.2e-06, 0.96) 85 141 0 5580
  Dinuc 2+3 (0.35, 5.8e+02) (15, 9.4e+16) (0.0017, 5.2e+141) (0.0017, inf) (0.0017, 0.97) 89 140 0 5580
expEIG Dinuc 1+2 (0.13, 2.6e+02) (15, inf) (1.4e-05, 1.5e+70) (1.4e-05, 0.96) (1.4e-05, 0.96) 86 137 0 5580
  Dinuc 2+3 (0.36, 5.4e+02) (17, 2e+17) (0.0026, 1.6e+133) (0.0025, 1) (0.0026, 1) 99 56 0 5580
  1. The species were Anabaena variabilis, Anabaena sp. PCC 7120 and Thermosynechococcus elongatus.
  2. 1 Fit – the algorithm used for the constrained estimation of Q; 2 – median and maximum values; 3 – Number of P matrices for the indicated algorithm with an invalid probability; 4 – total number of matrices; inf – an infinite difference, typically arising from an exponentiation error.