Skip to main content

Table 4 Exponentiation of individual matrices from protein coding exons from a triad of microbial species.

From: Pathological rate matrices: from primates to pathogens

Fit1

Data

Norm2

Cond2

ϵTAYL2

ϵEIG2

ϵPADÉ2

E T A Y L 3 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeCyrau0aa0baaSqaaiabdsfaujabdgeabjabdMfazjabdYeambqaaiabiodaZaaaaaa@32A5@

E E I G 3 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeCyrau0aa0baaSqaaiabhweafjabhMeajjabhEeahbqaaiabiodaZaaaaaa@315E@

EPADÉ3

N4

expPADÉ

Dinuc 1+2

(0.13, 3.7e+02)

(10, 1.3e+18)

(6.2e-06, 1.2e+137)

(6.2e-06, 86)

(6.2e-06, 0.96)

85

141

0

5580

 

Dinuc 2+3

(0.35, 5.8e+02)

(15, 9.4e+16)

(0.0017, 5.2e+141)

(0.0017, inf)

(0.0017, 0.97)

89

140

0

5580

expEIG

Dinuc 1+2

(0.13, 2.6e+02)

(15, inf)

(1.4e-05, 1.5e+70)

(1.4e-05, 0.96)

(1.4e-05, 0.96)

86

137

0

5580

 

Dinuc 2+3

(0.36, 5.4e+02)

(17, 2e+17)

(0.0026, 1.6e+133)

(0.0025, 1)

(0.0026, 1)

99

56

0

5580

  1. The species were Anabaena variabilis, Anabaena sp. PCC 7120 and Thermosynechococcus elongatus.
  2. 1 Fit – the algorithm used for the constrained estimation of Q; 2 – median and maximum values; 3 – Number of P matrices for the indicated algorithm with an invalid probability; 4 – total number of matrices; inf – an infinite difference, typically arising from an exponentiation error.