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Table 1 Plasmids analyzed

From: Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

Plasmid

Organism

Length (nt)

# ORF

Accession Number

R721

Escherichia coli

75582

91

NC_002525

p9123

Escherichia coli

6222

8

NC_005324

pC15-1a

Escherichia coli

92353

100

NC_005327

pCol-let

Escherichia coli

5847

7

NC_002487

pAPEC-O2-R

Escherichia coli

101375

119

NC_006671

pColK-K235

Escherichia coli

8318

7

NC_006881

pRK2

Escherichia coli

5360

6

NC__005970

pECO29

Escherichia coli

3895

2

NC_001537

CloDF13

Escherichia coli

9957

8

NC_002119

pBHRK18

Escherichia coli

5721

4

NC_005568

pBHRK19

Escherichia coli

5721

4

NC_005569

pFL129

Escherichia coli

6464

4

NC_005923

pAPEC-O2-ColV

Escherichia coli

184501

209

NC_007675

pCoo

Escherichia coli

98396

94

NC_007635

pB171

Escherichia coli

68817

80

NC_002142

pO113

Escherichia coli

165548

155

NC_007365

pLG13

Escherichia coli

6293

7

NC_005019

pIGAL1

Escherichia coli

8145

3

NC_005248

p1658/97

Escherichia coli

125491

141

NC_004998

pKL1

Escherichia coli KL4

1549

1

NC_002145

pO157

Escherichia coli O157:H7 str. Sakai

92077

184

NC_002128

pOSAK1

Escherichia coli O157:H7 str. Sakai

3306

3

NC_002127

pSFD10

Salmonella choleraesuis

4091

6

NC_003079

pOU1113

Salmonella enterica

80156

89

NC_007208

pC

Salmonella enterica serovar Enteritidis

5269

4

NC_003457

pBERT

Salmonella enterica subsp.enterica serovar Berta

4656

9

NC_001848

pKDSC50

Salmonella enterica subsp. enterica serovar Choleraesuis

49503

48

NC_002638

cryptic_plasmid

Salmonella enterica subsp.enterica serovar Choleraesuis

6066

7

NC_005862

pSCV50

Salmonella enterica subsp. enterica serovar Choleraesuis

49558

51

NC_006855

pSC138

Salmonella enterica subsp.enterica serovar Choleraesuis

138742

170

NC_006856

pHCM1

Salmonella enterica subsp. enterica serovar Typhi str. CT18

218160

235

NC_003384

pHCM2

Salmonella enterica subsp.enterica serovar Typhi str. CT18

106516

105

NC_003385

pP

Salmonella enteritidis

4301

3

NC_003455

pK

Salmonella enteritidis

4245

3

NC_003456

pB

Salmonella enteritidis

1983

1

NC_005002

R27

Salmonella typhi

180461

207

NC_002305

pSC101

Salmonella typhimurium

9263

6

NC_002056

R64

Salmonella typhimurium

120826

135

NC_005014

pU302S

Salmonella typhimurium

3208

4

NC_006815

pU302L

Salmonella typhimurium

84514

103

NC_006816

pSLT

Salmonella typhimurium

93939

112

NC_003277

pSB4_227

Shigella boydii Sb227

126697

148

NC_007608

pSD1_197

Shigella dysenteriae Sd197

182726

223

NC_007607

pWR501

Shigella flexneri

221851

293

NC_002698

pCP301

Shigella flexneri 2a str. 301

221618

261

NC_004851

ColJs

Shigella sonnei

5210

3

NC_002809

pSS_046

Shigella sonnei Ss046

214396

238

NC_007385

  1. The table lists the plasmids used in this work, their accession numbers, their host organism, their length, and the number of proteins their genes code for.