Figure 7From: ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein familyProfileGrid of 300 bacterial RecA protein sequences. The first row is the E. coli RecA protein sequence. The ProfileGrid cells are colored according to the following bins: <10% (white), ≥10% (gray), ≥25% (yellow), ≥50% (orange), ≥70% (green), ≥90% (red). The boxed regions (potential motifs) were drawn by JProfileGrid from the similarity plot calculations using an 80% threshold cutoff. For visual clarity, only the first 150 residues of the alignment are shown; and, the frequency values are omitted. Additional File 2 is the entire RecA ProfileGrid including frequency values. This figure was generated from the JProfileGrid spreadsheet output.Back to article page