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Table 2 The number of known biological interactions mined from BioGRID database [25] for each output cluster with cutoff = 0.9.

From: A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data

ci

n1

n2

n3

size

ci

n 1

n 2

n 3

size

1

4

4

12

12

5

0

0

5

5

2

3

4

7

7

6

0

0

4

4

3

0

0

6

6

9

0

0

4

4

4

5

4

5

5

10

6

4

4

4

  1. ci corresponds to the cluster index, n 1 the number of known biological interactions, n 2 the number of genes within each cluster having interactions with other genes, n 3 the number of known cell-cycle regulated genes according to the Spellman et al. [6], and size the number of genes within each cluster.
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BMC Bioinformatics

ISSN: 1471-2105

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