Skip to main content

Table 3 The number of known biological interactions mined from BioGRID database [25] for each output cluster with cutoff = 0.8.

From: A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data

ci

n1

n2

n3

size

ci

n 1

n 2

n 3

size

ci

n1

n2

n3

size

ci

n 1

n 2

n 3

size

2

2

2

16

16

19

1

1

2

7

47

3

3

0

5

80

0

0

0

4

3

5

5

14

14

22

0

0

7

7

48

1

1

0

5

83

2

3

3

4

4

2

2

11

11

23

0

0

7

7

49

3

3

0

5

86

1

1

0

4

5

1

1

11

11

26

4

4

0

6

61

2

2

0

4

91

0

0

0

4

6

0

0

11

11

27

2

2

0

6

63

0

0

2

4

92

1

1

0

4

7

0

0

9

9

28

4

4

6

6

66

1

2

4

4

95

2

2

4

4

9

6

5

9

9

32

0

0

5

6

67

1

1

4

4

96

0

0

4

4

10

2

3

8

8

33

2

2

6

6

68

1

2

3

4

100

2

2

1

4

11

8

6

8

8

37

7

5

0

5

69

2

2

0

4

103

0

0

0

4

12

1

1

8

8

38

0

0

5

5

70

1

1

0

4

104

0

0

0

4

13

1

2

8

8

39

0

0

5

5

73

1

1

0

4

106

0

0

2

4

14

1

1

8

8

41

1

1

1

5

74

1

1

0

4

109

0

0

1

4

15

1

1

7

7

44

3

3

0

5

75

0

0

4

4

     

16

2

3

7

7

45

3

3

0

5

76

1

2

0

4

     

18

2

2

6

7

46

0

0

0

5

79

2

2

0

4

     
  1. ci corresponds to the cluster index, n 1 the number of known biological interactions, n 2 the number of genes within each cluster having interactions with other genes, n 3 the number of known cell-cycle regulated genes according to the classification by Spellman et al. [6], and size the number of genes within each cluster.