BMC Bioinformatics

Table 5 The number of known biological interactions mined from BioGRID database [25] for each output cluster with cutoff = 0.6.

From: A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data

ci	n1	n2	n3	size	ci	n1	n2	n3	size	ci	n1	n2	n3	size	ci	n1	n2	n3	size
1	109	58	108	118	80	2	3	0	20	184	5	5	4	13	297	1	2	2	9
2	108	61	105	116	84	3	3	0	19	186	2	2	1	13	307	0	0	1	8
3	32	31	19	88	86	1	1	7	19	187	1	1	0	13	312	0	0	0	8
4	24	23	32	83	91	3	4	0	19	188	2	2	0	13	313	0	0	0	8
5	104	41	1	69	97	6	6	0	18	196	2	2	2	13	315	1	2	1	8
9	19	20	33	43	100	8	10	0	18	197	0	0	1	13	316	2	2	1	8
11	13	12	8	43	108	7	7	0	18	198	0	0	1	13	325	2	2	0	8
12	11	10	34	41	112	7	6	0	18	199	2	2	0	13	330	0	0	0	8
15	16	14	20	35	113	0	0	17	18	202	1	1	5	12	332	1	1	0	8
17	15	13	0	33	116	4	5	0	17	206	2	2	1	12	334	5	4	0	8
19	96	22	0	32	117	3	5	2	17	207	5	6	1	12	340	1	1	1	8
20	15	13	2	30	120	5	4	2	17	213	1	1	5	12	354	2	3	0	8
22	4	4	0	30	121	5	5	0	17	214	3	3	1	12	355	5	5	0	8
27	7	8	2	29	122	2	3	14	16	215	1	1	4	12	356	2	2	0	8
30	18	12	0	28	124	1	1	7	16	217	2	2	0	12	358	0	0	3	8
31	8	12	6	28	127	0	0	2	16	219	0	0	0	12	364	1	1	0	8
34	3	3	11	27	129	0	0	0	16	221	2	3	0	12	365	2	2	0	8
36	7	7	9	26	132	4	4	7	16	222	1	1	3	12	366	1	1	1	8
37	25	16	0	26	134	4	5	3	16	230	5	6	0	11	372	2	3	0	7
38	4	5	1	26	137	4	6	0	16	231	1	1	0	11	374	3	3	1	7
39	7	8	0	26	138	5	7	1	16	232	1	1	2	11	375	0	0	0	7
40	4	4	1	26	139	3	4	3	16	236	0	0	2	11	377	2	2	0	7
41	4	4	2	26	140	3	3	0	15	237	2	2	0	11	378	2	2	0	7
42	5	5	13	26	143	1	2	0	15	240	0	0	2	11	388	0	0	2	6
44	17	12	18	26	145	4	4	3	15	241	7	5	0	11	389	0	0	1	6
46	2	2	10	25	147	9	9	0	15	242	2	2	2	11	395	1	1	2	6
50	31	11	2	24	150	2	2	0	15	243	3	3	0	11	413	1	1	0	6
51	3	3	22	23	151	6	6	2	15	245	4	4	0	11	416	0	0	0	6
52	23	13	10	23	152	0	0	1	15	249	2	2	0	10	420	0	0	0	6
53	4	4	0	23	153	2	2	0	14	255	3	3	0	10	421	0	0	0	6
54	8	10	2	23	154	4	5	0	14	259	2	3	0	10	429	1	1	0	6
58	4	3	0	22	155	1	2	3	14	267	4	5	2	10	431	1	1	0	6
63	7	8	0	22	166	2	2	0	14	270	1	1	2	10	433	1	1	0	6
67	1	1	3	21	167	2	2	2	14	285	3	3	0	10	441	2	2	0	6
71	7	7	12	21	169	10	6	0	14	289	1	1	2	10	442	3	3	0	6
74	12	12	1	20	175	4	5	1	14	290	0	0	0	10	444	1	1	0	6
76	2	2	9	20	176	1	1	0	14	291	6	4	0	10	445	0	0	0	6
79	3	3	0	20	180	4	4	0	13	296	4	4	0	9

ci corresponds to the cluster index, n 1 the number of known biological interactions, n 2 the number of genes within each cluster having interactions with other genes, n 3 the number of known cell-cycle regulated genes according to the Spellman et al. [6], and size the number of genes within each cluster.

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