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Table 6 Predicted annotations by AGPS algorithm versus annotations from GO

From: Gene function prediction using labeled and unlabeled data

MIPS functional categories

Gene ontology

genes annotated by GO

genes predicted by AGPS that match GO annotation

01 metabolism

GO:0008152

YEL044W YHL029C YGL185C YMR010W

YHL029C YGL185C YMR010W

10 cell cycle and dna processing

GO:0007067 GO:0006260 GO:0006281

YDR106W YGL168W YER038C

YDR168W YER038C

11 transcription

GO:0006364 GO:0006396

YLR196W YLR204W

YLR196W

12 protein synthesis

GO:0043037

YFR032C YLR287C

YFR032C YLR287C

14 protein fate

GO:0006457

YNL310C

YNL310C

20 cellular transport

GO:0006888

YDL099W

YDL099W

32 cell rescue, defense and virulence

GO:0006974 GO:0006950 GO:0006979

YOL063C YMR251W YDR346C

YOL063C YMR251W YDR346C

42 biogenesis of cellular components

GO:0019898 GO:0007005 GO:0007047

YPL005W YDR339C YNL149C YKR100C YNL310C YOR060C

YKR100C YOR060C

  1. The predicted terms versus GO terms, where only the predicted annotations that match GO terms with the corresponding MIPS annotations are shown.