RFAM Family | Complete benchmark dataset | Subset with pairwise identity up to 30% | ||||
---|---|---|---|---|---|---|
 | Probalign | SSEARCH | Difference | Probalign | SSEARCH | Difference |
5S_rRNA | 22.7 | 20.7 | -2.0 | Zero datasets | ||
U1 (4) | 15.0 | 15.6 | 0.6 | 87.3 | 100.0 | 12.7 |
tRNA (256) | 62.0 | 74.4 | 12.3 | 69.8 | 84.8 | 15.0 |
RNaseP_bact_a | 34.0 | 33.0 | -1.0 | Zero datasets | ||
RNaseP_bact_b | 29.0 | 29.1 | -0.1 | Â | Â | Â |
U3 | 41.3 | 38.8 | -2.5 | Â | Â | Â |
U4 (8) | 25.3 | 22.2 | -3.1 | 52.8 | 11 | -41.8 |
SRP_euk_arch (132) | 43.8 | 56.4 | 12.6 | 62.1 | 78.0 | 15.9 |
tmRNA (180) | 32.0 | 36.3 | 4.3 | 50.5 | 59.8 | 9.4 |
Intron_gpI (4) | 67.4 | 80.1 | 12.7 | 100.0 | 100.0 | 0.0 |
SECIS (208) | 82.3 | 93.9 | 11.5 | 87.9 | 100.0 | 12.1 |
IRE (216) | 44.4 | 48.7 | 4.2 | 88.7 | 96.5 | 7.7 |
THI | 29.5 | 30.1 | 0.6 | Zero datasets | ||
Hammerhead_1 | 43.7 | 46.0 | 2.3 | Â | Â | Â |
Purine (4) | 16.2 | 16.4 | 0.2 | 17.4 | 1.8 | -15.6 |
Lysine (16) | 48.0 | 57.3 | 9.3 | 73.1 | 100.0 | 26.9 |
SRP_bact (80) | 28.5 | 25.7 | -2.8 | 62.6 | 65.0 | 2.3 |
SSU_rRNA_5 (4) | 30.5 | 32.4 | 1.9 | 39 | 61 | 22 |
T-box | 27.4 | 46.0 | 18.6 | Zero datasets | ||
glmS (4) | 23.4 | 21.0 | -2.4 | 73.8 | 78.4 | 4.6 |
RNaseP_arch (8) | 32.4 | 34.0 | 1.6 | 87 | 100.0 | 13 |
IRES_Cripavirus | 5.7 | 3.9 | -1.8 | Zero datasets |