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Table 3 Mean percent error as a function of query RNA flank size.

From: Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities

Query RNA flank size Probalign SSEARCH BLAST ClustalW
50 35.4* 39.3 41.9 48.5
100 36.8* 40.8 44.5 51.4
150 38.5* 43.3 45.9 53.2
  1. For each flank size there are 3,429 datasets (see Methods Section for description of benchmark). As in Table 1 about 105 datasets per flank size are omitted on which BLAST does not return any output. Bold indicates the best performance and * indicates Friedman rank test P-value < 0.05.