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Table 5 Top Scoring Phylogenetic 3'UTR Motifs Identified in 3'UTRs. Top 1% and 5% Gene Sets.

From: Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation

Rank

Motif

Genes with Motif

Genes w/o Motif

Genes with Motif

Genes w/o Motif

Fisher's exact p-value

Hochberg adj p-value

Top 1% Phylo Motifs

Genes Overexpressed in ER+ Tumors

Genes Overexpressed in ER- Tumors

  

1

YACTGCCR

17

113

2

143

0.0002

0.0423

2

YYGCATGT

10

120

1

144

0.0037

1.0000

3

TGTANANAGA

12

118

3

142

0.0142

1.0000

4

TGCMNTAA

26

104

14

131

0.0168

1.0000

5

TGTGAA

51

79

37

108

0.0196

1.0000

6

TGTANNNTAG

13

117

4

141

0.0214

1.0000

7

TTTCTRNNAAA

2

128

11

134

0.0219

1.0000

8

AAGCACA

19

111

9

136

0.0273

1.0000

9

CTAKWTTT

23

107

12

133

0.0286

1.0000

10

TTTCTA

52

78

41

104

0.0423

1.0000

Top 5% Phylo Motifs

      

1

WGCCTTA

134

562

80

652

< 0.0001

0.0031

2

CTAKWTTT

149

547

93

639

< 0.0001

0.0032

3

TGTGAA

305

391

238

494

< 0.0001

0.0034

4

TATATTT

210

486

149

583

< 0.0001

0.0066

5

TGTANNNTAG

73

623

36

696

0.0001

0.0235

6

TGTRNNNWATT

148

548

101

631

0.0002

0.0571

7

WRCCAAAA

113

583

71

661

0.0003

0.0706

8

TGTATANW

218

478

168

564

0.0004

0.1144

9

CTGTATWW

134

562

91

641

0.0005

0.1248

10

TGTRNTTT

310

386

261

471

0.0007

0.1747