| NC | NP | #Edges | #Published | %Published | %GO BP |
γ
|
R
2
|
---|
P-P PCC: no time lag
| 101 | 4 | 142 | 20 | 14.08 | 38.03 | -0.69 | 0.45 |
P-P PCC: one time lag
| 101 | 16 | 185 | 31 | 16.76 | 30.81 | -0.96 | 0.79 |
S-S PCC: no time lag
| 91 | 1 | 60 | 17 | 28.33 | 45.83 | -1.27 | 0.65 |
S-S PCC: one time lag
| 91 | 11 | 155 | 29 | 18.71 | 27.74 | -0.89 | 0.70 |
- P-P PCC means point to point (total 18 points) Pearson correlation coefficient between two time series profiles.
- S-S PCC means segment to segment (total 17 segments) Pearson correlation coefficient and the segment (say i) value is +1 (-1) if the value at point i is less (greater) than that at point i + 1 [53].
- Time lag means when aligning the two gene profiles, one of them needs to be shifted relative to the other.
- #Edges means the total interactions reconstructed;
- #Published means the reconstructed interactions that were previously published;
- %Published is the percentage of the published interactions among all the reconstructed interactions;
- %GO BP means the percentage of the reconstructed interactions whose genes or gene products pair share a common Gene Ontology (GO) Biological Process (BP) annotation from the SGD GO Slim mapper [46];
- γ and R2 are the power in P(k) ~ kγand coefficient of determination returned by the fit() function, respectively (see 'Results' – 'Computation Study' section for more details).