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Figure 4 | BMC Bioinformatics

Figure 4

From: The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology

Figure 4

Graphical output of GO term analysis. An example of over-represented GO terms form the biological process category associated with genes from the DET-MI and -ME expression clusters is shown. The names of expression cluster and the numbers of genes are indicated on top of each column. The number of loci associated with a given GO term is shown to the left of the columns. Numbers of loci as observed and expected are given within color-coded rectangles with red and blue indicating over- and under-representation, respectively, according to the scale bar on top of the GO terms. Numbers in bold or green indicate significantly over-represented terms or genes selected by the user. To obtain the output shown we used an FDR-adjusted p-value of < 0.001, an OSIR > 0.1, and the minimum number of genes associated with one term was set to be > 10.

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