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Table 2 Tight Cluster Results 1

From: Building pathway clusters from Random Forests classification using class votes

LymphNode (A2ii in Additional file 1)

OOB error(%)

Number of probes

BC-Pelp1_Modulation_of_Estrogen_Receptor

15.38

20

Alzheimer's_disease

17.13

23

BC-Deregulation_of_CDK5_in_Alzheimers_Disease

16.08

24

BC-Downregulated_of_MTA_3_in_ER_negative_Breast_Tumors

12.24

26

BC-GATA3_participate_in_activating_the_Th2_cytokine

11.89

33

Nitrogen_metabolism

14.34

40

Gene Symbols of informative genes in this pathway cluster

  

MAPK3, PELP1, ESR1, PDZK1, HSPB1, CA12, GLS, IL5, JUNB, GATA3, MAP2K3, MAPT, STH, CSNK1A1

  

p 53 (A3i in Additional file 1)

  

BC-Pelp1_Modulation_of_Estrogen_Receptor

13.94

20

BC-Downregulated_of_MTA_3_in_ER_negative_Breast_Tumors_

15.54

26

BC-GATA3_participate_in_activating_the_Th2_cytokine

13.55

33

Nitrogen_metabolism

17.13

40

BC-CARM1_and_Regulation_of_the_Estrogen_Receptor

14.34

54

Gene Symbols of informative genes in this pathway cluster

  

MAPK3, PELP1, ESR1, PDZK1, HSPB1, HDAC2, CA12, GLS, IL5, JUNB, GATA3, MAP2K3

  
  1. The bold pathways are those with low OOB error rates