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Table 3 Tight Cluster Results 2

From: Building pathway clusters from Random Forests classification using class votes

LymphNode (A2iii in Additional file 1)

OOB error(%)

Number of probes

beta_Alanine_metabolism

16.08

42

Alanine_and_aspartate_metabolism

16.78

42

Glutamate_metabolism

16.08

50

Butanoate_metabolism

16.08

59

Propanoate_metabolism

17.83

59

Valine_leucine_and_isoleucine_degradation

14.69

71

Gene Symbols of informative genes in this pathway cluster

  

ABAT, ALDH1A3, GLUL, GMPS, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1

  

p 53 (A3ii in Additional file 1)

  

Alanine_and_aspartate_metabolism

17.53

42

Butanoate_metabolism

15.54

59

Propanoate_metabolism

18.33

59

GM-Glycolysis_and_Gluconeogenesis

23.11

66

Valine_leucine_and_isoleucine_degradation

15.54

71

Gene Symbols of informative genes in this pathway cluster

  

ABAT, ALDH1A3, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1

  

Consort (A1i in Additional file 1)

  

Glycosphingolipid_biosynthesis

23.23

34

BC-GATA3_participate_in_activating_the_Th2_cytokine

14.14

43

Butanoate_metabolism

15.15

82

Propanoate_metabolism

21.21

85

Valine_leucine_and_isoleucine_degradation

17.17

25

Gene Symbols of informative genes in this pathway cluster

  

ABAT, GATA3, HSD17B4, MCCC2, PRKAR1B

  
  1. The bold pathways are those with low OOB error rates