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Table 3 Tight Cluster Results 2

From: Building pathway clusters from Random Forests classification using class votes

LymphNode (A2iii in Additional file 1) OOB error(%) Number of probes
beta_Alanine_metabolism 16.08 42
Alanine_and_aspartate_metabolism 16.78 42
Glutamate_metabolism 16.08 50
Butanoate_metabolism 16.08 59
Propanoate_metabolism 17.83 59
Valine_leucine_and_isoleucine_degradation 14.69 71
Gene Symbols of informative genes in this pathway cluster   
ABAT, ALDH1A3, GLUL, GMPS, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1   
p 53 (A3ii in Additional file 1)   
Alanine_and_aspartate_metabolism 17.53 42
Butanoate_metabolism 15.54 59
Propanoate_metabolism 18.33 59
GM-Glycolysis_and_Gluconeogenesis 23.11 66
Valine_leucine_and_isoleucine_degradation 15.54 71
Gene Symbols of informative genes in this pathway cluster   
ABAT, ALDH1A3, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1   
Consort (A1i in Additional file 1)   
Glycosphingolipid_biosynthesis 23.23 34
BC-GATA3_participate_in_activating_the_Th2_cytokine 14.14 43
Butanoate_metabolism 15.15 82
Propanoate_metabolism 21.21 85
Valine_leucine_and_isoleucine_degradation 17.17 25
Gene Symbols of informative genes in this pathway cluster   
ABAT, GATA3, HSD17B4, MCCC2, PRKAR1B   
  1. The bold pathways are those with low OOB error rates