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Table 4 Proportion of genes showing more than the indicated number of literature support

From: Building pathway clusters from Random Forests classification using class votes

Informative genes not in pathway cluster (Table 2) of top 22 pathways for LymphNode

BC

ER

PR

≥ 1

0.44

0.33

0.20

≥ 2

0.31

0.27

0.18

≥ 5

0.24

0.20

0.09

LymphNode (pathway cluster)

BC

ER

PR

≥ 1

0.42

0.42

0.33

≥ 2

0.42

0.42

0.25

≥ 5

0.25

0.33

0.17

Informative genes not in pathway cluster (Table 2) of top 22 pathways for p 53

BC

ER

PR

≥ 1

0.41

0.35

0.20

≥ 2

0.33

0.28

0.13

≥ 5

0.24

0.24

0.11

p 53 (pathway cluster)

BC

ER

PR

≥ 1

1.00

1.00

0.75

≥ 2

1.00

0.75

0.63

≥ 5

0.63

0.63

0.25

Informative genes not in pathway cluster (Table 2) of top 22 pathways for Consort

BC

ER

PR

≥ 1

0.50

0.22

0.16

≥ 2

0.44

0.38

0.25

≥ 5

0.34

0.28

0.13

Consort (pathway cluster)

BC

ER

PR

≥ 1

0.88

0.75

0.63

≥ 2

0.75

0.63

0.50

≥ 5

0.50

0.50

0.25

  1. BC = breast cancer, ER = estrogen receptor, PR = progesterone receptor