Table 12 KEGG Pathways and total numbers of ORFs and reactions added to the aber model from KEGG and not included in IFF708
Kegg Pathway | Number of Reactions | Number of ORFs |
|---|---|---|
Citrate cycle (TCA cycle) | 8 | 12 |
Tryptophan metabolism | 5 | 2 |
Bile acid biosynthesis | 1 | 2 |
Fatty acid biosynthesis (path 1) | 32 | 1 |
One carbon pool by folate | 1 | 1 |
Biotin metabolism | 5 | 1 |
Selenoamino acid metabolism | 10 | 3 |
Folate biosynthesis | 2 | 1 |
Purine metabolism | 33 | 71 |
Pentose phosphate pathway | 1 | 1 |
Nicotinate and nicotinamide metabolism | 2 | 1 |
Fatty acid metabolism | 4 | 1 |
Lysine degradation | 7 | 2 |
Propanoate metabolism | 1 | 1 |
Glycine, serine and threonine metabolism | 17 | 12 |
C5-Branched dibasic acid metabolism | 6 | 2 |
Pyruvate metabolism | 8 | 5 |
Methionine metabolism | 10 | 3 |
Alanine and aspartate metabolism | 4 | 4 |
Ubiquitin mediated proteolysis | 1 | 14 |
Sulfur metabolism | 8 | 1 |
Nitrogen metabolism | 2 | 2 |
Glutamate metabolism | 4 | 4 |
Aminosugars metabolism | 2 | 1 |
N-Glycans biosynthesis | 8 | 14 |
Starch and sucrose metabolism | 3 | 4 |
Pentose and glucuronate interconversions | 2 | 1 |
Glycerolipid metabolism | 10 | 3 |
gamma-Hexachlorocyclohexane degradation | 7 | 7 |
Phenylalanine, tyrosine and tryptophan biosynthesis | 2 | 5 |
No Pathway Annotation | 50 | 153 |
RNA polymerase | 5 | 31 |
Lysine biosynthesis | 5 | 1 |
Oxidative phosphorylation | 3 | 26 |
Butanoate metabolism | 10 | 5 |
Fructose and mannose metabolism | 1 | 1 |
Pyrimidine metabolism | 29 | 68 |
1,4-Dichlorobenzene degradation | 3 | 1 |
Phosphatidylinositol signaling system | 1 | 10 |
DNA polymerase | 5 | 18 |
Porphyrin and chlorophyll metabolism | 2 | 1 |
Arginine and proline metabolism | 1 | 2 |
Cysteine metabolism | 11 | 3 |
Galactose metabolism | 1 | 1 |
Pantothenate and CoA biosynthesis | 6 | 2 |
Aminoacyl-tRNA biosynthesis | 18 | 27 |
Glycolysis / Gluconeogenesis | 12 | 8 |
Valine, leucine and isoleucine biosynthesis | 13 | 10 |
Riboflavin metabolism | 5 | 7 |