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Table 2 Actual level of the 5 test procedures in one simulation of 10 000 genes

From: Statistical methodology for the analysis of dye-switch microarray experiments

 

σ B 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaacciGae83Wdm3aa0baaSqaaiabdkeacbqaaiabikdaYaaaaaa@2FC9@ = 0.5

σ B 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaacciGae83Wdm3aa0baaSqaaiabdkeacbqaaiabikdaYaaaaaa@2FC9@ = 2

Method

5

10

20

30

5

10

20

30

Naive

6.9 (0.2)

7.3 (0.2)

7.3 (0.2)

7.5 (0.2)

13.2 (0.3)

13.9 (0.3)

14.0 (0.3)

14.2 (0.3)

Unbiased Paired

5.2 (0.2)

5.2 (0.2)

5.2 (0.2)

5.3 (0.2)

8.2 (0.3)

6.9 (0.2)

6 (0.2)

5.8 (0.2)

Unbiased Unpaired

2.1 (0.1)

1.3 (0.1)

1.0 (0.1)

1 (0.1)

4.6 (0.2)

3.4 (0.2)

2.7 (0.1)

2.9 (0.2)

ML

8.5 (0.3)

8.6 (0.3)

8.3 (0.3)

8.3 (0.3)

12.5 (0.4)

11.1 (0.3)

9.9 (0.3)

9.8 (0.3)

REML

4.7 (0.2)

4.2 (0.2)

4.5 (0.2)

4.9 (0.2)

14.7 (0.4)

8.5 (0.3)

5.9 (0.2)

5.5 (0.2)

  1. Actual mean level (standard error) of the 5 test procedures, for low ( σ B 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaacciGae83Wdm3aa0baaSqaaiabdkeacbqaaiabikdaYaaaaaa@2FC9@ = 0.5, left) and high ( σ B 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaacciGae83Wdm3aa0baaSqaaiabdkeacbqaaiabikdaYaaaaaa@2FC9@ = 2, right) values of biological variance, and different number of samples n in each condition (in column). The requested nominal threshold is 5%.
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BMC Bioinformatics

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