Table 1 Mouse muscle related transcription factors obtained from the TRANSFAC 11.1 Professional database.
From: Motif-directed network component analysis for regulatory network inference
Index | Regulatory Site | TRANSFAC Matrix ID | Brief Description |
|---|---|---|---|
1 | YY1 | M01035, M00059, M00069, M00793 | Ying Yang 1; common factor 1; delta-factor; F-ACT1; myc-CF1; NF-E1 |
2 | Tal-1 alpha:E47 | M00066 | Tal-1beta:E47 heterodimer. Random 35-mers bound by in vitro co-translated Tal-1alpha and E47 after 6 CASTing cycles |
3 | NF-Y | M00775, M00185, M00287, M00209 | Nuclear Factor Y; CCAAT-binding factor; CP1 |
4 | Alpha-CP1 | M00687 | alpha-CP1; CBF; CCAAT-binding factor; CP1 |
5 | Sp1 | M00008, M00196, M00932, M00931, M00933 | Stimulating Protein 1; trans-acting transcription factor 1 |
6 | Hand1:E47 | M00222 | Hand1:E47 heterodimer. Hand1 is thought to bind to the left half (positions 1–8), E47 to the right half (position 9–16) |
7 | MEF-2 | M00405 M00006, M00232, M00406, M00941, M00233, M00231 | Myogenic enhancer factor 2 |
8 | USF | M00796, M00187, M00217, M00121, M00122 | Upstream stimulating factor |
9 | USF2 | M00726 | Upstream stimulatory factor 2; Fos-interacting protein |
10 | Tal-1beta:E47 | M00065 | Tal-1alpha:E47 heterodimer. Random 35-mers bound by in vitro co-translated Tal-1beta and E47 after 6 CASTing cycles |
11 | Ebox | M01034 | Ebox binding protein |
12 | Myogenin | M00712 | Myf-4 (human); MyoG; myogenin |
13 | E2A | M00804, M00973 | E2-alpha; immunoglobulin enhancer binding factors E12/E47 |
14 | NKX25 | M01043 | Csx; NK2 transcription factor related, locus 5 (Drosophila) |
15 | Nkx2-5 | M00240, M00241 | Homeo domain factor Nkx-2.5/Csx, tinman homolog |
16 | TATA | M00252, M00216 | TATA-binding protein; TATA-box-binding protein; TBP; TFIID; TFIIDtau |
17 | TBX5 | M01019, M01020, M01044 | T-box protein 5 |
18 | MyoD | M00001, M00184, M00929 | Myoblast determining factor |
19 | SRF | M00152, M00810, M01007, M00186, M00215, M00922 | Serum Responsive Factor |
20 | TBP | M00471, M00980 | TATA-binding protein |
21 | GATA-4 | M00632 | GATA-binding factor 4 |
22 | GATA | M00789 | GATA-binding factor |
23 | E47 | M00071, M00002 | E2A; immunoglobulin enhancer-binding factor E12/E47 |
24 | E12 | M00693 | E2A; immunoglobulin enhancer-binding factor E12/E47 |