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Table 3 Cross-corpus results measured with F-score and threshold chosen on training set. F-score results for cross-corpus testing with the thresholds chosen on the training set. Rows correspond to training corpora and columns to test corpora. Δ denote the difference between the F-score result and the result achieved with the optimal threshold.

From: All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

 

AImed

Δ

BioInfer

Δ

HPRD50

Δ

IEPA

Δ

LLL

Δ

AImed

-

-

24.9%

22.2%

64.6%

4.4%

22.9%

44.5%

17.7%

56.8%

BioInfer

44.2%

3.0%

-

-

63.6%

0.3%

64.5%

3.5%

76.4%

1.6%

HPRD50

40.9%

1.3%

27.2%

15.3%

-

-

56.3%

8.8%

45.5%

22.4%

IEPA

38.4%

0.7%

47.0%

4.7%

65.6%

1.9%

-

-

77.0%

0.6%

LLL

32.6%

0.7%

42.2%

0.3%

58.3%

1.5%

63.9%

1.0%

-

-