Skip to main content

Table 3 Cross-corpus results measured with F-score and threshold chosen on training set. F-score results for cross-corpus testing with the thresholds chosen on the training set. Rows correspond to training corpora and columns to test corpora. Δ denote the difference between the F-score result and the result achieved with the optimal threshold.

From: All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

  AImed Δ BioInfer Δ HPRD50 Δ IEPA Δ LLL Δ
AImed - - 24.9% 22.2% 64.6% 4.4% 22.9% 44.5% 17.7% 56.8%
BioInfer 44.2% 3.0% - - 63.6% 0.3% 64.5% 3.5% 76.4% 1.6%
HPRD50 40.9% 1.3% 27.2% 15.3% - - 56.3% 8.8% 45.5% 22.4%
IEPA 38.4% 0.7% 47.0% 4.7% 65.6% 1.9% - - 77.0% 0.6%
LLL 32.6% 0.7% 42.2% 0.3% 58.3% 1.5% 63.9% 1.0% - -
\