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Table 2 Protein-protein interactions collected in the POINT database.

From: Ortholog-based protein-protein interaction prediction and its application to inter-species interactions

Species (Taxonomy ID)a

All Available PPIs

Confident PPIs

 

PPI

Orthologs Groups PPIb

PPI

Orthologs Groups PPIb

S. cerevisiae (4932)

82 445

70 264

31 162

25 612

H. sapiens (9606)

45 378

44 251

29 074

28 559

D. melanogaster (7227)

29 342

14 071

1106

764

C. elegans (6239)

5267

1572

692

288

M. musculus (10090)

3851

3746

1320

1291

P. falciparum (36329)

2844

188

8

8

R. norvegicus (10116)

1469

1399

1003

964

A. thaliana (3702)

1420

691

353

223

S. pombe (284812)

356

227

163

98

G. gallus (9031)

43

41

17

16

O. sativa (39947)

49

33

1

1

C. familiaris (9615)

2

2

1

1

  1. a These species are ranked by the number of available PPIs, except for Others and Inter-species.
  2. b Orthologous Group PPIs are PPIs with ortholog information available.
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BMC Bioinformatics

ISSN: 1471-2105

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